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Go to: General Description References Cross-references Sequence
 
General Information
Primary Accession # AE008837
Accession # AE008837 AE006468
SRS Entry ID EMBL:AE008837
Molecule Type linear genomic DNA
Sequence Length 20233
Entry Division PRO (Prokaryotes)
Entry Data Class STD (Standard)
Sequence Version AE008837.1
Creation Date 29-OCT-2001
Modification Date 12-AUG-2005
Description
Description Salmonella typhimurium LT2, section 141 of 220 of the complete genome.
Keywords .;
Organism Salmonella typhimurium LT2
Organism Classification Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.
References
1. McClelland,M.; Sanderson,K.E.; Spieth,J.; Clifton,S.W.; Latreille,P.; Courtney,L.; Porwollik,S.; Ali,J.; Dante,M.; Du,F.; Hou,S.; Layman,D.; Leonard,S.; Nguyen,C.; Scott,K.; Holmes,A.; Grewal,N.; Mulvaney,E.; Ryan,E.; Sun,H.; Florea,L.; Miller,W.; Stoneking,T.; Nhan,M.; Waterston,R.; Wilson,R.K.;
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
Nature 413(6858):852-856 (2001)
DOI 10.1038/35101614
Pubmed 11677609
Position 1-20233
2. Submitted (29-MAR-2001) to the EMBL/GenBank/DDBJ databases. Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA
Position 1-20233
Group
The Salmonella typhimurium Genome Sequencing Project
Database Cross-references
EMBL-CON AE006468.
Features
Key Location Qualifier Value
source 1..20233 organism Salmonella typhimurium LT2
strain LT2; SGSC 1412; ATCC 700720
mol_type genomic DNA
note LT2
db_xref taxon:99287
gene 178..1070 gene STM2986
rbs 178..183 gene STM2986
note putative RBS for STM2986; RegulonDB:STMS1H003038
cds 183..1070 codon_start 1
transl_table 11
gene STM2986
product putative integral membrane protein
note similar to E. coli orf, hypothetical protein (AAC76822.1); Blastp hit to AAC76822.1 (300 aa), 31% identity in aa 25 - 294
db_xref GOA:Q8ZMC2
db_xref InterPro:IPR000620
db_xref InterPro:IPR004626
db_xref UniProtKB/TrEMBL:Q8ZMC2
protein_id AAL21864.1
translation
gene complement(1122..1936) gene ygdL
note synonym: STM2987
cds complement(1122..1928) codon_start 1
transl_table 11
gene ygdL
product putative enzyme
note similar to E. coli putative enzyme (AAC75854.1); Blastp hit to AAC75854.1 (268 aa), 93% identity in aa 1 - 267
db_xref GOA:Q8ZMC1
db_xref HSSP:P12282
db_xref InterPro:IPR000594
db_xref InterPro:IPR009036
db_xref UniProtKB/TrEMBL:Q8ZMC1
protein_id AAL21865.1
translation
rbs complement(1931..1936) gene ygdL
note putative RBS for ygdL; RegulonDB:STMS1H003039
gene complement(2038..3151) gene mltA
note synonym: STM2988
cds complement(2038..3135) codon_start 1
transl_table 11
gene mltA
product membrane-bound lytic murein transglycosylase A
EC_number 3.2.1.-
note similar to E. coli membrane-bound lytic murein transglycosylase A (AAC75855.1); Blastp hit to AAC75855.1 (365 aa), 92% identity in aa 1 - 365
db_xref GOA:Q8ZMC0
db_xref HSSP:P0A935
db_xref InterPro:IPR005300
db_xref InterPro:IPR010611
db_xref UniProtKB/TrEMBL:Q8ZMC0
protein_id AAL21866.1
translation
rbs complement(3146..3151) gene mltA
note putative RBS for mltA; RegulonDB:STMS1H003040
gene 3343..3416 gene metZ
note synonym: STM2989
trna 3343..3416 gene metZ
product tRNA-Met
gene 3449..3522 gene metW
note synonym: STM2990
trna 3449..3522 gene metW
product tRNA-Met
gene complement(3635..4895) gene amiC
note synonym: STM2991
cds complement(3635..4888) codon_start 1
transl_table 11
gene amiC
product N-acetylmuramoyl-L-alanine amidase
EC_number 3.5.1.28
note similar to E. coli putative amidase (AAC75856.1); Blastp hit to AAC75856.1 (447 aa), 94% identity in aa 31 - 446
db_xref GOA:Q8ZMB9
db_xref InterPro:IPR002508
db_xref InterPro:IPR006311
db_xref UniProtKB/TrEMBL:Q8ZMB9
protein_id AAL21867.1
translation
rbs complement(4890..4895) gene amiC
note putative RBS for amiC; RegulonDB:STMS1H003041
gene 5109..6452 gene argA
note synonym: STM2992
rbs 5109..5114 gene argA
note putative RBS for argA; RegulonDB:STMS1H003042
cds 5121..6452 codon_start 1
transl_table 11
gene argA
product N-alpha-acetylglutamate synthase
EC_number 2.3.1.1
note amino-acid acetyltransferase; similar to E. coli N-acetylglutamate synthase; amino acid acetyltransferase (AAC75857.1); Blastp hit to AAC75857.1 (443 aa), 93% identity in aa 1 - 443
db_xref GOA:Q8ZMB8
db_xref InterPro:IPR000182
db_xref InterPro:IPR001048
db_xref InterPro:IPR010167
db_xref UniProtKB/Swiss-Prot:Q8ZMB8
protein_id AAL21868.1
translation
gene complement(6555..8401) gene recD
note synonym: STM2993
cds complement(6555..8390) codon_start 1
transl_table 11
gene recD
product exonuclease V, alpha chain
EC_number 3.1.11.5
note similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75858.1); Blastp hit to AAC75858.1 (608 aa), 84% identity in aa 1 - 604
db_xref GOA:Q8ZMB7
db_xref HSSP:P04993
db_xref InterPro:IPR000606
db_xref InterPro:IPR003593
db_xref InterPro:IPR006344
db_xref UniProtKB/TrEMBL:Q8ZMB7
protein_id AAL21869.1
translation
gene complement(8387..11932) gene recB
note synonym: STM2994
cds complement(8387..11932) codon_start 1
transl_table 11
gene recB
product exonuclease V, beta chain
EC_number 3.1.11.5
note similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75859.1); Blastp hit to AAC75859.1 (1180 aa), 84% identity in aa 1 - 1180
db_xref GOA:Q8ZMB6
db_xref HSSP:P08394
db_xref InterPro:IPR000212
db_xref InterPro:IPR004586
db_xref UniProtKB/TrEMBL:Q8ZMB6
protein_id AAL21870.1
translation
rbs complement(8396..8401) gene recD
note putative RBS for recD; RegulonDB:STMS1H003043
gene complement(11925..14824) gene ptr
note synonym: STM2995
cds complement(11925..14813) codon_start 1
transl_table 11
gene ptr
product protease III
EC_number 3.4.24.55
note similar to E. coli protease III (AAC75860.1); Blastp hit to AAC75860.1 (962 aa), 88% identity in aa 1 - 962
db_xref GOA:Q8ZMB5
db_xref InterPro:IPR001431
db_xref InterPro:IPR007863
db_xref InterPro:IPR011765
db_xref UniProtKB/Swiss-Prot:Q8ZMB5
protein_id AAL21871.1
translation
rbs complement(14819..14824) gene ptr
note putative RBS for ptr; RegulonDB:STMS1H003044
gene complement(14991..18373) gene recC
note synonym: STM2996
cds complement(14991..18362) codon_start 1
transl_table 11
gene recC
product exonuclease V, subunit
EC_number 3.1.11.5
note similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75861.1); Blastp hit to AAC75861.1 (1122 aa), 88% identity in aa 1 - 1122
db_xref GOA:Q8ZMB4
db_xref HSSP:P07648
db_xref InterPro:IPR006697
db_xref UniProtKB/TrEMBL:Q8ZMB4
protein_id AAL21872.1
translation
rbs complement(18368..18373) gene recC
note putative RBS for recC; RegulonDB:STMS1H003045
gene complement(18378..18709) gene ppdC
note synonym: STM2997
cds complement(18378..18698) codon_start 1
transl_table 11
gene ppdC
product prepilin peptidase dependent protein C
note putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein C (AAC75862.1); Blastp hit to AAC75862.1 (107 aa), 69% identity in aa 1 - 106
db_xref InterPro:IPR001120
db_xref InterPro:IPR012902
db_xref UniProtKB/TrEMBL:Q8ZMB3
protein_id AAL21873.1
translation
gene complement(18683..19104) gene ygdB
note synonym: STM2998
cds complement(18683..19090) codon_start 1
transl_table 11
gene ygdB
product putative periplasmic protein
note similar to E. coli orf, hypothetical protein (AAC75863.1); Blastp hit to AAC75863.1 (121 aa), 52% identity in aa 1 - 121
db_xref UniProtKB/TrEMBL:Q8ZMB2
protein_id AAL21874.1
translation
rbs complement(18704..18709) gene ppdC
note putative RBS for ppdC; RegulonDB:STMS1H003046
gene complement(19087..19661) gene ppdB
note synonym: STM2999
cds complement(19087..19650) codon_start 1
transl_table 11
gene ppdB
product prepilin peptidase dependent protein B
note putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein B (AAC75864.1); Blastp hit to AAC75864.1 (187 aa), 67% identity in aa 3 - 187
db_xref InterPro:IPR001120
db_xref InterPro:IPR012902
db_xref UniProtKB/TrEMBL:Q8ZMB1
protein_id AAL21875.1
translation
rbs complement(19099..19104) gene ygdB
note putative RBS for ygdB; RegulonDB:STMS1H003047
gene complement(19641..20111) gene ppdA
note synonym: STM3000
cds complement(19641..20111) codon_start 1
transl_table 11
gene ppdA
product prepilin peptidase dependent protein A
note putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein A (AAC75865.1); Blastp hit to AAC75865.1 (156 aa), 65% identity in aa 1 - 155
db_xref InterPro:IPR001120
db_xref InterPro:IPR012902
db_xref UniProtKB/TrEMBL:Q8ZMB0
protein_id AAL21876.1
translation
rbs complement(19656..19661) gene ppdA
note putative RBS for ppdB; RegulonDB:STMS1H003048
Sequence
Characteristics Length: 20233 BP, A Count:4686, C Count:5748, G Count:5076, T Count:4723, Others Count:0
Sequence
 
Go to: General Description References Cross-references Sequence
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