General
Information |
Primary Accession # |
AE008837 |
Accession # |
AE008837 AE006468 |
SRS Entry ID |
EMBL:AE008837 |
Molecule Type |
linear genomic DNA |
Sequence Length |
20233 |
Entry Division |
PRO (Prokaryotes) |
Entry Data Class |
STD (Standard) |
Sequence Version |
AE008837.1 |
Creation Date |
29-OCT-2001 |
Modification Date |
12-AUG-2005 |
Description |
Description |
Salmonella typhimurium LT2, section
141 of 220 of the complete genome. |
Keywords |
.; |
Organism |
Salmonella typhimurium LT2 |
Organism Classification |
Bacteria; Proteobacteria;
Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae;
Salmonella. |
References |
1. |
McClelland,M.; Sanderson,K.E.;
Spieth,J.; Clifton,S.W.; Latreille,P.; Courtney,L.;
Porwollik,S.; Ali,J.; Dante,M.; Du,F.; Hou,S.; Layman,D.;
Leonard,S.; Nguyen,C.; Scott,K.; Holmes,A.; Grewal,N.;
Mulvaney,E.; Ryan,E.; Sun,H.; Florea,L.; Miller,W.;
Stoneking,T.; Nhan,M.; Waterston,R.; Wilson,R.K.; Complete genome
sequence of Salmonella enterica serovar Typhimurium
LT2 Nature 413(6858):852-856 (2001) |
DOI |
10.1038/35101614 |
Pubmed |
11677609 |
Position |
1-20233 |
2. |
Submitted (29-MAR-2001) to the
EMBL/GenBank/DDBJ databases. Genome Sequencing Center,
Department of Genetics, Washington University School of
Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA
|
Position |
1-20233 |
Group |
The Salmonella typhimurium Genome
Sequencing Project
| | |
Database
Cross-references |
EMBL-CON |
AE006468.
|
Features |
Key |
Location |
Qualifier |
Value |
source
|
1..20233 |
organism |
Salmonella typhimurium LT2 |
strain |
LT2; SGSC 1412; ATCC 700720 |
mol_type |
genomic DNA |
note |
LT2 |
db_xref |
taxon:99287
|
gene
|
178..1070 |
gene |
STM2986 |
rbs
|
178..183 |
gene |
STM2986 |
note |
putative RBS for STM2986;
RegulonDB:STMS1H003038 |
cds
|
183..1070 |
codon_start |
1 |
transl_table |
11 |
gene |
STM2986 |
product |
putative integral membrane protein |
note |
similar to E. coli orf, hypothetical protein
(AAC76822.1); Blastp hit to AAC76822.1 (300 aa), 31% identity
in aa 25 - 294 |
db_xref |
GOA:Q8ZMC2
|
db_xref |
InterPro:IPR000620
|
db_xref |
InterPro:IPR004626
|
db_xref |
UniProtKB/TrEMBL:Q8ZMC2
|
protein_id |
AAL21864.1
|
translation |
|
gene
|
complement(1122..1936) |
gene |
ygdL |
note |
synonym: STM2987 |
cds
|
complement(1122..1928) |
codon_start |
1 |
transl_table |
11 |
gene |
ygdL |
product |
putative enzyme |
note |
similar to E. coli putative enzyme
(AAC75854.1); Blastp hit to AAC75854.1 (268 aa), 93% identity
in aa 1 - 267 |
db_xref |
GOA:Q8ZMC1
|
db_xref |
HSSP:P12282
|
db_xref |
InterPro:IPR000594
|
db_xref |
InterPro:IPR009036
|
db_xref |
UniProtKB/TrEMBL:Q8ZMC1
|
protein_id |
AAL21865.1
|
translation |
|
rbs
|
complement(1931..1936) |
gene |
ygdL |
note |
putative RBS for ygdL; RegulonDB:STMS1H003039
|
gene
|
complement(2038..3151) |
gene |
mltA |
note |
synonym: STM2988 |
cds
|
complement(2038..3135) |
codon_start |
1 |
transl_table |
11 |
gene |
mltA |
product |
membrane-bound lytic murein transglycosylase A
|
EC_number |
3.2.1.-
|
note |
similar to E. coli membrane-bound lytic murein
transglycosylase A (AAC75855.1); Blastp hit to AAC75855.1 (365
aa), 92% identity in aa 1 - 365 |
db_xref |
GOA:Q8ZMC0
|
db_xref |
HSSP:P0A935
|
db_xref |
InterPro:IPR005300
|
db_xref |
InterPro:IPR010611
|
db_xref |
UniProtKB/TrEMBL:Q8ZMC0
|
protein_id |
AAL21866.1
|
translation |
|
rbs
|
complement(3146..3151) |
gene |
mltA |
note |
putative RBS for mltA; RegulonDB:STMS1H003040
|
gene
|
3343..3416 |
gene |
metZ |
note |
synonym: STM2989 |
trna
|
3343..3416 |
gene |
metZ |
product |
tRNA-Met |
gene
|
3449..3522 |
gene |
metW |
note |
synonym: STM2990 |
trna
|
3449..3522 |
gene |
metW |
product |
tRNA-Met |
gene
|
complement(3635..4895) |
gene |
amiC |
note |
synonym: STM2991 |
cds
|
complement(3635..4888) |
codon_start |
1 |
transl_table |
11 |
gene |
amiC |
product |
N-acetylmuramoyl-L-alanine amidase |
EC_number |
3.5.1.28
|
note |
similar to E. coli putative amidase
(AAC75856.1); Blastp hit to AAC75856.1 (447 aa), 94% identity
in aa 31 - 446 |
db_xref |
GOA:Q8ZMB9
|
db_xref |
InterPro:IPR002508
|
db_xref |
InterPro:IPR006311
|
db_xref |
UniProtKB/TrEMBL:Q8ZMB9
|
protein_id |
AAL21867.1
|
translation |
|
rbs
|
complement(4890..4895) |
gene |
amiC |
note |
putative RBS for amiC; RegulonDB:STMS1H003041
|
gene
|
5109..6452 |
gene |
argA |
note |
synonym: STM2992 |
rbs
|
5109..5114 |
gene |
argA |
note |
putative RBS for argA; RegulonDB:STMS1H003042
|
cds
|
5121..6452 |
codon_start |
1 |
transl_table |
11 |
gene |
argA |
product |
N-alpha-acetylglutamate synthase |
EC_number |
2.3.1.1
|
note |
amino-acid acetyltransferase; similar to E.
coli N-acetylglutamate synthase; amino acid acetyltransferase
(AAC75857.1); Blastp hit to AAC75857.1 (443 aa), 93% identity
in aa 1 - 443 |
db_xref |
GOA:Q8ZMB8
|
db_xref |
InterPro:IPR000182
|
db_xref |
InterPro:IPR001048
|
db_xref |
InterPro:IPR010167
|
db_xref |
UniProtKB/Swiss-Prot:Q8ZMB8
|
protein_id |
AAL21868.1
|
translation |
|
gene
|
complement(6555..8401) |
gene |
recD |
note |
synonym: STM2993 |
cds
|
complement(6555..8390) |
codon_start |
1 |
transl_table |
11 |
gene |
recD |
product |
exonuclease V, alpha chain |
EC_number |
3.1.11.5
|
note |
similar to E. coli DNA helicase, ATP-dependent
dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
(AAC75858.1); Blastp hit to AAC75858.1 (608 aa), 84% identity
in aa 1 - 604 |
db_xref |
GOA:Q8ZMB7
|
db_xref |
HSSP:P04993
|
db_xref |
InterPro:IPR000606
|
db_xref |
InterPro:IPR003593
|
db_xref |
InterPro:IPR006344
|
db_xref |
UniProtKB/TrEMBL:Q8ZMB7
|
protein_id |
AAL21869.1
|
translation |
|
gene
|
complement(8387..11932) |
gene |
recB |
note |
synonym: STM2994 |
cds
|
complement(8387..11932)
|
codon_start |
1 |
transl_table |
11 |
gene |
recB |
product |
exonuclease V, beta chain |
EC_number |
3.1.11.5
|
note |
similar to E. coli DNA helicase, ATP-dependent
dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
(AAC75859.1); Blastp hit to AAC75859.1 (1180 aa), 84% identity
in aa 1 - 1180 |
db_xref |
GOA:Q8ZMB6
|
db_xref |
HSSP:P08394
|
db_xref |
InterPro:IPR000212
|
db_xref |
InterPro:IPR004586
|
db_xref |
UniProtKB/TrEMBL:Q8ZMB6
|
protein_id |
AAL21870.1
|
translation |
|
rbs
|
complement(8396..8401) |
gene |
recD |
note |
putative RBS for recD; RegulonDB:STMS1H003043
|
gene
|
complement(11925..14824)
|
gene |
ptr |
note |
synonym: STM2995 |
cds
|
complement(11925..14813)
|
codon_start |
1 |
transl_table |
11 |
gene |
ptr |
product |
protease III |
EC_number |
3.4.24.55
|
note |
similar to E. coli protease III (AAC75860.1);
Blastp hit to AAC75860.1 (962 aa), 88% identity in aa 1 - 962
|
db_xref |
GOA:Q8ZMB5
|
db_xref |
InterPro:IPR001431
|
db_xref |
InterPro:IPR007863
|
db_xref |
InterPro:IPR011765
|
db_xref |
UniProtKB/Swiss-Prot:Q8ZMB5
|
protein_id |
AAL21871.1
|
translation |
|
rbs
|
complement(14819..14824)
|
gene |
ptr |
note |
putative RBS for ptr; RegulonDB:STMS1H003044
|
gene
|
complement(14991..18373)
|
gene |
recC |
note |
synonym: STM2996 |
cds
|
complement(14991..18362)
|
codon_start |
1 |
transl_table |
11 |
gene |
recC |
product |
exonuclease V, subunit |
EC_number |
3.1.11.5
|
note |
similar to E. coli DNA helicase, ATP-dependent
dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
(AAC75861.1); Blastp hit to AAC75861.1 (1122 aa), 88% identity
in aa 1 - 1122 |
db_xref |
GOA:Q8ZMB4
|
db_xref |
HSSP:P07648
|
db_xref |
InterPro:IPR006697
|
db_xref |
UniProtKB/TrEMBL:Q8ZMB4
|
protein_id |
AAL21872.1
|
translation |
|
rbs
|
complement(18368..18373)
|
gene |
recC |
note |
putative RBS for recC; RegulonDB:STMS1H003045
|
gene
|
complement(18378..18709)
|
gene |
ppdC |
note |
synonym: STM2997 |
cds
|
complement(18378..18698)
|
codon_start |
1 |
transl_table |
11 |
gene |
ppdC |
product |
prepilin peptidase dependent protein C |
note |
putative component in type IV pilin biogenesis;
similar to E. coli prepilin peptidase dependent protein C
(AAC75862.1); Blastp hit to AAC75862.1 (107 aa), 69% identity
in aa 1 - 106 |
db_xref |
InterPro:IPR001120
|
db_xref |
InterPro:IPR012902
|
db_xref |
UniProtKB/TrEMBL:Q8ZMB3
|
protein_id |
AAL21873.1
|
translation |
|
gene
|
complement(18683..19104)
|
gene |
ygdB |
note |
synonym: STM2998 |
cds
|
complement(18683..19090)
|
codon_start |
1 |
transl_table |
11 |
gene |
ygdB |
product |
putative periplasmic protein |
note |
similar to E. coli orf, hypothetical protein
(AAC75863.1); Blastp hit to AAC75863.1 (121 aa), 52% identity
in aa 1 - 121 |
db_xref |
UniProtKB/TrEMBL:Q8ZMB2
|
protein_id |
AAL21874.1
|
translation |
|
rbs
|
complement(18704..18709)
|
gene |
ppdC |
note |
putative RBS for ppdC; RegulonDB:STMS1H003046
|
gene
|
complement(19087..19661)
|
gene |
ppdB |
note |
synonym: STM2999 |
cds
|
complement(19087..19650)
|
codon_start |
1 |
transl_table |
11 |
gene |
ppdB |
product |
prepilin peptidase dependent protein B |
note |
putative component in type IV pilin biogenesis;
similar to E. coli prepilin peptidase dependent protein B
(AAC75864.1); Blastp hit to AAC75864.1 (187 aa), 67% identity
in aa 3 - 187 |
db_xref |
InterPro:IPR001120
|
db_xref |
InterPro:IPR012902
|
db_xref |
UniProtKB/TrEMBL:Q8ZMB1
|
protein_id |
AAL21875.1
|
translation |
|
rbs
|
complement(19099..19104)
|
gene |
ygdB |
note |
putative RBS for ygdB; RegulonDB:STMS1H003047
|
gene
|
complement(19641..20111)
|
gene |
ppdA |
note |
synonym: STM3000 |
cds
|
complement(19641..20111)
|
codon_start |
1 |
transl_table |
11 |
gene |
ppdA |
product |
prepilin peptidase dependent protein A |
note |
putative component in type IV pilin biogenesis;
similar to E. coli prepilin peptidase dependent protein A
(AAC75865.1); Blastp hit to AAC75865.1 (156 aa), 65% identity
in aa 1 - 155 |
db_xref |
InterPro:IPR001120
|
db_xref |
InterPro:IPR012902
|
db_xref |
UniProtKB/TrEMBL:Q8ZMB0
|
protein_id |
AAL21876.1
|
translation |
|
rbs
|
complement(19656..19661)
|
gene |
ppdA |
note |
putative RBS for ppdB; RegulonDB:STMS1H003048
|
Sequence |
Characteristics |
Length: 20233
BP, A
Count:4686, C
Count:5748, G
Count:5076, T
Count:4723, Others
Count:0 |
Sequence |
|